Publications and Selected Conferences

2024

Tripathy, K*., Fogarty, M.*, Svoboda, A. M., Schroeder, M. L., Rafferty, S. M., Richter, E. J., Tracy, C., Mansfield, P. K., Booth, M., Fishell, A. K., Sherafati, A., Markow, Z. E., Wheelock, M. D., Arbeláez, A. M., Schlaggar, B. L., Smyser, C. D., Eggebrecht, A. T., & Culver, J. P. (2024). Mapping brain function in adults and young children during naturalistic viewing with high-density diffuse optical tomography. Human Brain Mapping, 45(7), e26684. https://doi.org/10.1002/hbm.26684

2023

Constantini, I et al. (2023). A cellular resolution atlas of Broca’s area. Science Advances, Vol 9 Issue 41. DOI:10.1126/sciadv.adg3844

Morgan Fogarty, Sean M. Rafferty, Anthony C. O'Sullivan, Calamity F. Svoboda, Zachary E. Markow, Edward J. Richter, Tessa George, Kelsey King, Dana Wilhelm, Kalyan Tripathy, Jason W. Trobaugh, Adam T. Eggebrecht, and Joseph P. Culver "A whole-head ultra-high density diffuse optical tomography system for functional human brain mapping", Proc. SPIE PC12365, Neural Imaging and Sensing 2023, PC1236501 (17 March 2023); https://doi.org/10.1117/12.2649118

M. Fogarty, S. M. Rafferty, A. C. O’Sullivan, C. F. Svoboda, Z. E. Markow, E. J. Richter, T. George, K. King, D. Wilhelm, K. Tripathy, J. W. Trobaugh, A. T. Eggebrecht, and J. P. Culver, "A Whole Head Ultra-High Density Diffuse Optical Tomography System for Naturalistic and Resting State Functional Human Brain Mapping," in Biophotonics Congress: Optics in the Life Sciences 2023 (OMA, NTM, BODA, OMP, BRAIN), Technical Digest Series (Optica Publishing Group, 2023), paper BM2B.5.

2022

Varadarajan, D., Magnain, C., Fogarty, M., Boas, D. A., Fischl, B., & Wang, H. (2022). A novel algorithm for multiplicative speckle noise reduction in ex vivo human brain OCT images. NeuroImage, 257. https://doi.org/10.1016/j.neuroimage.2022.119304

Morgan Fogarty, Kalyan Tripathy, Alexandra M. Svoboda, Mariel L. Schroeder, Sean Rafferty, Patricia Mansfield, Rachel Ulbrich, Madison Booth, Edward J. Richter, Christopher D. Smyser, Adam T. Eggebrecht, and Joseph P. Culver "Machine learning feature extraction in naturalistic stimuli for human brain mapping using high-density diffuse optical tomography", Proc. SPIE PC11945, Clinical and Translational Neurophotonics 2022, PC1194508 (7 March 2022); https://doi.org/10.1117/12.2608946

2021

Liu, C. J., Ammon, W., Siless, V., Fogarty, M., Wang, R., Atzeni, A., Aganj, I., Iglesias, J. E., Zöllei, L., Fischl, B., Schmahmann, J. D., & Wang, H. (2021). Quantification of volumetric morphometry and optical property in the cortex of human cerebellum at micrometer resolution. NeuroImage, 244. https://doi.org/10.1016/j.neuroimage.2021.118627

2020

Hui Wang, Viviana Siless, Morgan Fogarty, Iman Aganj, Douglas Greve, and Bruce Fischl "The optical property and morphometry of human cerebellum cortex with automatic serial sectioning polarization sensitive optical coherence tomography (Conference Presentation)", Proc. SPIE 11226, Neural Imaging and Sensing 2020, 112260R (9 March 2020); https://doi.org/10.1117/12.2550620

2019

Frau-Pascual, A., Fogarty, M., Fischl, B., Yendiki, A., & Aganj, I. (2019). Quantification of structural brain connectivity via a conductance model. NeuroImage, 189, 485–496. https://doi.org/10.1016/j.neuroimage.2019.01.033

Magnain, C., Augustinack, J. C., Tirrell, L., Fogarty, M., Frosch, M. P., Boas, D., Fischl, B., & Rockland, K. S. (2019). Colocalization of neurons in optical coherence microscopy and Nissl-stained histology in Brodmann’s area 32 and area 21. Brain Structure and Function, 224(1), 351–362. https://doi.org/10.1007/s00429-018-1777-z

2018

Sinha, L., Fogarty, M., Zhou, W., Giudice, A., Brankov, J. G., & Tichauer, K. M. (2018). Design and characterization of a dead-time regime enhanced early photon projection imaging system. Review of Scientific Instruments, 89(4). https://doi.org/10.1063/1.5003620